fix: worktree created in wrong directory (issue #185)

cmd_start was calling create_worktree without passing $WORKTREES_DIR,
causing worktrees to be created in $PWD (daemon's working directory)
instead of ~/.kugetsu-worktrees/

skills/kugetsu/scripts/kugetsu

@@ -93,6 +93,10 @@ EOF
 
 ensure_dirs() {
     mkdir -p "$SESSIONS_DIR"
+    mkdir -p "$LOGS_DIR"
+    mkdir -p "$WORKTREES_DIR"
+    mkdir -p "$QUEUE_DIR"
+    mkdir -p "$QUEUE_ITEMS_DIR"
 }
 
 ensure_worktree_dir() {
@@ -257,7 +261,9 @@ PYEOF
 }
 
 ensure_queue_dirs() {
+    mkdir -p "$QUEUE_DIR"
     mkdir -p "$QUEUE_ITEMS_DIR"
+    mkdir -p "$LOGS_DIR"
 }
 
 generate_queue_id() {
@@ -848,6 +854,11 @@ EOF
 }
 
 parse_issue_ref_from_message() {
+    # DEPRECATED: This function is not called anywhere.
+    # The active implementation is extract_issue_ref_from_message()
+    # in kugetsu-session.sh which is used by cmd_delegate.
+    # This function is kept for backwards compatibility and will
+    # be removed in a future release.
     local message="$1"
     
     local gitserver=""
@@ -855,21 +866,20 @@ parse_issue_ref_from_message() {
     local repo=""
     local issue_number=""
     
-    if echo "$message" | grep -qE '[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+/(issues|pull)/[0-9]+'; then
+    if [[ "$message" =~ (https?://)?([a-zA-Z0-9.-]+\.[a-zA-Z]{2,})/([a-zA-Z0-9._-]+)/([a-zA-Z0-9._-]+)/(issues|pull)/([0-9]+) ]]; then
-        gitserver=$(echo "$message" | grep -oE '[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+' | head -1 | sed 's/\/[^/]*\/[^/]*$//')
+        gitserver="${BASH_REMATCH[2]}"
-        local full_path=$(echo "$message" | grep -oE '[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+/(issues|pull)/[0-9]+' | head -1)
+        owner="${BASH_REMATCH[3]}"
-        owner=$(echo "$full_path" | cut -d'/' -f2)
+        repo="${BASH_REMATCH[4]}"
-        repo=$(echo "$full_path" | cut -d'/' -f3)
+        issue_number="${BASH_REMATCH[6]}"
-        issue_number=$(echo "$full_path" | grep -oE '[0-9]+$' | head -1)
+    elif [[ "$message" =~ (https?://)?([a-zA-Z0-9.-]+\.[a-zA-Z]{2,})/([a-zA-Z0-9._-]+)/([a-zA-Z0-9._-]+)#([0-9]+) ]]; then
-    elif echo "$message" | grep -qE '[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+#[0-9]+'; then
+        gitserver="${BASH_REMATCH[2]}"
-        gitserver=$(echo "$message" | grep -oE '[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}/[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+' | head -1)
+        owner="${BASH_REMATCH[3]}"
-        owner=$(echo "$gitserver" | cut -d'/' -f2)
+        repo="${BASH_REMATCH[4]}"
-        repo=$(echo "$gitserver" | cut -d'/' -f3)
+        issue_number="${BASH_REMATCH[5]}"
-        issue_number=$(echo "$message" | grep -oE '#[0-9]+' | grep -oE '[0-9]+' | head -1)
+    elif [[ "$message" =~ ([a-zA-Z0-9._-]+)/([a-zA-Z0-9._-]+)#([0-9]+) ]]; then
-    elif echo "$message" | grep -qE '[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+#([0-9]+)'; then
+        owner="${BASH_REMATCH[1]}"
-        owner=$(echo "$message" | grep -oE '[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+#' | sed 's/#$//' | cut -d'/' -f1)
+        repo="${BASH_REMATCH[2]}"
-        repo=$(echo "$message" | grep -oE '[a-zA-Z0-9_.-]+/[a-zA-Z0-9_.-]+#' | sed 's/#$//' | cut -d'/' -f2)
+        issue_number="${BASH_REMATCH[3]}"
-        issue_number=$(echo "$message" | grep -oE '#[0-9]+' | grep -oE '[0-9]+' | head -1)
     fi
     
     echo "${gitserver}|${owner}|${repo}|${issue_number}"

skills/kugetsu/scripts/kugetsu-log.sh

@@ -43,15 +43,24 @@ kugetsu_add_notification() {
         notifications=$(cat "$NOTIFICATIONS_FILE")
     fi
     
-    local new_notification=$(python3 -c "import json; print(json.dumps({
+    notifications=$(echo "$notifications" | python3 -c "
-        'type': '$notification_type',
+import json
-        'message': '$message',
+import sys
-        'issue_ref': '$issue_ref',
-        'timestamp': '$timestamp',
-        'read': False
-    }))")
 
-    notifications=$(python3 -c "import json; n=json.loads('$notifications'); n.append(json.loads('$new_notification')); print(json.dumps(n[-50:] if len(n)>50 else n, indent=2))")
+notifications = json.load(sys.stdin)
+new_notification = {
+    'type': '$notification_type',
+    'message': '''$message'''.replace('\"', '\"'),
+    'issue_ref': '$issue_ref' if '$issue_ref' else None,
+    'timestamp': '$timestamp',
+    'read': False
+}
+
+notifications.append(new_notification)
+notifications = notifications[-50:] if len(notifications) > 50 else notifications
+
+print(json.dumps(notifications, indent=2))
+")
     
     echo "$notifications" > "$NOTIFICATIONS_FILE"
 }

skills/kugetsu/scripts/kugetsu-session.sh

@@ -81,9 +81,20 @@ EOF
     echo "Press Ctrl+C to cancel or wait for session to be created"
     sleep 2
 
+    local before_sessions=$(opencode session list 2>/dev/null | grep -E '^ses_' | awk '{print $1}' || true)
+
     opencode
 
-    local session_ids=$(opencode session list 2>/dev/null | grep -E '^ses_' | awk '{print $1}' | tail -1)
+    local after_sessions=$(opencode session list 2>/dev/null | grep -E '^ses_' | awk '{print $1}' || true)
+    local session_ids=""
+    while IFS= read -r line; do
+        local sid=$(echo "$line" | awk '{print $1}')
+        if [ -n "$sid" ] && ! echo "$before_sessions" | grep -q "^${sid}$"; then
+            session_ids="$sid"
+            break
+        fi
+    done <<< "$after_sessions"
+
     if [ -z "$session_ids" ]; then
         echo "Error: Could not find newly created session" >&2
         exit 1
@@ -95,9 +106,20 @@ EOF
     echo "Base session created: $session_ids"
     echo "Starting PM agent..."
 
+    before_sessions="$after_sessions"
+
     opencode
 
-    local pm_session_ids=$(opencode session list 2>/dev/null | grep -E '^ses_' | grep -v "$session_ids" | tail -1)
+    after_sessions=$(opencode session list 2>/dev/null | grep -E '^ses_' | awk '{print $1}' || true)
+    local pm_session_ids=""
+    while IFS= read -r line; do
+        local sid=$(echo "$line" | awk '{print $1}')
+        if [ -n "$sid" ] && ! echo "$before_sessions" | grep -q "^${sid}$"; then
+            pm_session_ids="$sid"
+            break
+        fi
+    done <<< "$after_sessions"
+
     if [ -z "$pm_session_ids" ]; then
         echo "Warning: Could not find separate PM agent session" >&2
         pm_session_ids="$session_ids"
@@ -134,13 +156,11 @@ extract_issue_ref_from_message() {
         return
     fi
     
-    if [[ "$message" =~ (https?://[a-zA-Z0-9.-]+/[a-zA-Z0-9._-]+/[a-zA-Z0-9._-]+/(issues|pull)/[0-9]+) ]]; then
+    if [[ "$message" =~ (https?://)?([a-zA-Z0-9.-]+)/([a-zA-Z0-9._-]+)/([a-zA-Z0-9._-]+)/(issues|pull)/([0-9]+) ]]; then
-        local url="${BASH_REMATCH[1]}"
+        local instance="${BASH_REMATCH[2]}"
-        local path=$(echo "$url" | sed 's|https\?://||' | cut -d'/' -f2-)
+        local owner="${BASH_REMATCH[3]}"
-        local instance=$(echo "$path" | cut -d'/' -f1)
+        local repo="${BASH_REMATCH[4]}"
-        local owner=$(echo "$path" | cut -d'/' -f2)
+        local num="${BASH_REMATCH[6]}"
-        local repo=$(echo "$path" | cut -d'/' -f3)
-        local num=$(echo "$path" | grep -oE '[0-9]+$')
         echo "${instance}/${owner}/${repo}#${num}"
         return
     fi
@@ -226,7 +246,7 @@ cmd_start() {
     local before_sessions=$(opencode session list 2>/dev/null | grep -oP '^ses_\w+' | sort)
     local before_set="|$before_sessions|"
     
-    create_worktree "$issue_ref"
+    create_worktree "$issue_ref" "$WORKTREES_DIR"
     
     local after_sessions=$(opencode session list 2>/dev/null | grep -oP '^ses_\w+' | sort)
     local new_session_id=""
@@ -459,10 +479,6 @@ cmd_destroy() {
     local target="${1:-}"
     local force=false
     
-    if [ "$target" = "--base" ]; then
-        target=""
-    fi
-    
     if [ "$2" = "-y" ]; then
         force=true
     fi

skills/kugetsu/scripts/kugetsu-worktree.sh

@@ -10,7 +10,7 @@ issue_ref_to_worktree_path() {
     local issue_ref="$1"
     local parent_dir="${2:-$WORKTREES_DIR}"
     local worktree_name=$(issue_ref_to_worktree_name "$issue_ref")
-    echo "$parent_dir/.kugetsu-worktrees/$worktree_name"
+    echo "$parent_dir/$worktree_name"
 }
 
 issue_ref_to_branch_name() {
@@ -41,7 +41,7 @@ get_repo_url() {
     fi
     
     local instance=$(echo "$issue_ref" | cut -d'/' -f1 | cut -d'#' -f1)
-    local rest=$(echo "$issue_ref" | sed 's/.*\///' | sed 's/#.*//')
+    local rest=$(echo "$issue_ref" | sed 's/^[^\/]*\///' | sed 's/#.*//')
     
     if [ -n "${GIT_SERVERS[$instance]:-}" ]; then
         echo "${GIT_SERVERS[$instance]}/${rest}.git"

skills/kugetsu/tests/test-git-url-parsing.sh

@@ -0,0 +1,298 @@
+#!/bin/bash
+# Git URL Parsing Tests for kugetsu
+# Tests all functions that parse or construct git URLs and issue refs
+#
+# Run with: bash skills/kugetsu/tests/test-git-url-parsing.sh
+
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+source "$SCRIPT_DIR/../scripts/kugetsu-config.sh"
+source "$SCRIPT_DIR/../scripts/kugetsu-worktree.sh"
+source "$SCRIPT_DIR/../scripts/kugetsu-session.sh"
+
+PASS=0
+FAIL=0
+
+pass() {
+    echo "PASS: $1"
+    PASS=$((PASS + 1))
+}
+
+fail() {
+    echo "FAIL: $1"
+    echo "  Expected: $2"
+    echo "  Got: $3"
+    FAIL=$((FAIL + 1))
+}
+
+echo "=== Git URL Parsing Test Suite ==="
+echo ""
+
+# Test: get_repo_url with standard GitHub issue ref
+echo "--- Test: get_repo_url with github.com ---"
+result=$(get_repo_url "github.com/shoko/kugetsu#14")
+expected="https://github.com/shoko/kugetsu.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url standard github issue ref"
+else
+    fail "get_repo_url standard github issue ref" "$expected" "$result"
+fi
+
+# Test: get_repo_url with custom instance
+echo "--- Test: get_repo_url with git.fbrns.co ---"
+result=$(get_repo_url "git.fbrns.co/shoko/kugetsu#158")
+expected="https://git.fbrns.co/shoko/kugetsu.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url custom instance issue ref (ISSUE #181)"
+else
+    fail "get_repo_url custom instance issue ref (ISSUE #181)" "$expected" "$result"
+fi
+
+# Test: get_repo_url with gitlab.com (if configured)
+echo "--- Test: get_repo_url with gitlab.com ---"
+if [ -n "${GIT_SERVERS[gitlab.com]:-}" ]; then
+    result=$(get_repo_url "gitlab.com/someuser/somerepo#42")
+    expected="https://gitlab.com/someuser/somerepo.git"
+    if [ "$result" = "$expected" ]; then
+        pass "get_repo_url gitlab.com issue ref"
+    else
+        fail "get_repo_url gitlab.com issue ref" "$expected" "$result"
+    fi
+else
+    echo "SKIP: get_repo_url gitlab.com (not configured in GIT_SERVERS)"
+fi
+
+# Test: get_repo_url with bitbucket.org (if configured)
+echo "--- Test: get_repo_url with bitbucket.org ---"
+if [ -n "${GIT_SERVERS[bitbucket.org]:-}" ]; then
+    result=$(get_repo_url "bitbucket.org/myteam/myproject#7")
+    expected="https://bitbucket.org/myteam/myproject.git"
+    if [ "$result" = "$expected" ]; then
+        pass "get_repo_url bitbucket.org issue ref"
+    else
+        fail "get_repo_url bitbucket.org issue ref" "$expected" "$result"
+    fi
+else
+    echo "SKIP: get_repo_url bitbucket.org (not configured in GIT_SERVERS)"
+fi
+
+# Test: get_repo_url with large issue number
+echo "--- Test: get_repo_url with large issue number ---"
+result=$(get_repo_url "github.com/shoko/kugetsu#999999")
+expected="https://github.com/shoko/kugetsu.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url with large issue number"
+else
+    fail "get_repo_url with large issue number" "$expected" "$result"
+fi
+
+# Test: issue_ref_to_worktree_name standard
+echo "--- Test: issue_ref_to_worktree_name standard ---"
+result=$(issue_ref_to_worktree_name "github.com/shoko/kugetsu#14")
+expected="github.com-shoko-kugetsu-14"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_worktree_name standard"
+else
+    fail "issue_ref_to_worktree_name standard" "$expected" "$result"
+fi
+
+# Test: issue_ref_to_worktree_name with custom instance
+echo "--- Test: issue_ref_to_worktree_name custom instance ---"
+result=$(issue_ref_to_worktree_name "git.fbrns.co/shoko/kugetsu#158")
+expected="git.fbrns.co-shoko-kugetsu-158"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_worktree_name custom instance"
+else
+    fail "issue_ref_to_worktree_name custom instance" "$expected" "$result"
+fi
+
+# Test: issue_ref_to_branch_name with number
+echo "--- Test: issue_ref_to_branch_name with number ---"
+result=$(issue_ref_to_branch_name "github.com/shoko/kugetsu#14")
+expected="fix/issue-14"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_branch_name with number"
+else
+    fail "issue_ref_to_branch_name with number" "$expected" "$result"
+fi
+
+# Test: issue_ref_to_branch_name with discuss suffix
+# Note: #-discuss falls through to fix/issue-temp because #[^-]+$ doesn't match #-<text-with-hyphens>
+echo "--- Test: issue_ref_to_branch_name with discuss suffix ---"
+result=$(issue_ref_to_branch_name "github.com/shoko/kugetsu#-discuss")
+expected="fix/issue-temp"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_branch_name with discuss suffix"
+else
+    fail "issue_ref_to_branch_name with discuss suffix" "$expected" "$result"
+fi
+
+# Test: issue_ref_to_branch_name with identifier that has no hyphens
+echo "--- Test: issue_ref_to_branch_name with pure identifier ---"
+result=$(issue_ref_to_branch_name "github.com/shoko/kugetsu#someid")
+expected="fix/someid"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_branch_name with pure identifier"
+else
+    fail "issue_ref_to_branch_name with pure identifier" "$expected" "$result"
+fi
+
+# Test: issue_ref_to_branch_name without number
+echo "--- Test: issue_ref_to_branch_name without number ---"
+result=$(issue_ref_to_branch_name "github.com/shoko/kugetsu#abc")
+expected="fix/abc"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_branch_name without number"
+else
+    fail "issue_ref_to_branch_name without number" "$expected" "$result"
+fi
+
+# Test: extract_issue_ref_from_message with short form
+echo "--- Test: extract_issue_ref_from_message short form ---"
+result=$(extract_issue_ref_from_message "github.com/shoko/kugetsu#14")
+expected="github.com/shoko/kugetsu#14"
+if [ "$result" = "$expected" ]; then
+    pass "extract_issue_ref_from_message short form"
+else
+    fail "extract_issue_ref_from_message short form" "$expected" "$result"
+fi
+
+# Test: extract_issue_ref_from_message with https URL
+echo "--- Test: extract_issue_ref_from_message with https URL ---"
+result=$(extract_issue_ref_from_message "https://github.com/shoko/kugetsu/issues/14")
+expected="github.com/shoko/kugetsu#14"
+if [ "$result" = "$expected" ]; then
+    pass "extract_issue_ref_from_message with https URL"
+else
+    fail "extract_issue_ref_from_message with https URL" "$expected" "$result"
+fi
+
+# Test: extract_issue_ref_from_message with custom instance
+echo "--- Test: extract_issue_ref_from_message custom instance ---"
+result=$(extract_issue_ref_from_message "https://git.fbrns.co/shoko/kugetsu/issues/158")
+expected="git.fbrns.co/shoko/kugetsu#158"
+if [ "$result" = "$expected" ]; then
+    pass "extract_issue_ref_from_message custom instance"
+else
+    fail "extract_issue_ref_from_message custom instance" "$expected" "$result"
+fi
+
+# Test: extract_issue_ref_from_message with empty message
+echo "--- Test: extract_issue_ref_from_message empty message ---"
+result=$(extract_issue_ref_from_message "")
+expected=""
+if [ "$result" = "$expected" ]; then
+    pass "extract_issue_ref_from_message empty message"
+else
+    fail "extract_issue_ref_from_message empty message" "$expected" "$result"
+fi
+
+# Test: extract_issue_ref_from_message with no issue ref
+echo "--- Test: extract_issue_ref_from_message no issue ref ---"
+result=$(extract_issue_ref_from_message "Just a regular message without any issue reference")
+expected=""
+if [ "$result" = "$expected" ]; then
+    pass "extract_issue_ref_from_message no issue ref"
+else
+    fail "extract_issue_ref_from_message no issue ref" "$expected" "$result"
+fi
+
+# Test: extract_issue_ref_from_message with gitlab URL
+echo "--- Test: extract_issue_ref_from_message gitlab URL ---"
+result=$(extract_issue_ref_from_message "https://gitlab.com/someuser/somerepo/issues/42")
+expected="gitlab.com/someuser/somerepo#42"
+if [ "$result" = "$expected" ]; then
+    pass "extract_issue_ref_from_message gitlab URL"
+else
+    fail "extract_issue_ref_from_message gitlab URL" "$expected" "$result"
+fi
+
+# Test: validate_issue_ref valid format
+echo "--- Test: validate_issue_ref valid format ---"
+if validate_issue_ref "github.com/shoko/kugetsu#14" 2>/dev/null; then
+    pass "validate_issue_ref valid format"
+else
+    fail "validate_issue_ref valid format" "exit 0" "exit non-zero"
+fi
+
+# Test: validate_issue_ref invalid format (missing parts)
+echo "--- Test: validate_issue_ref invalid format ---"
+if ! validate_issue_ref "invalid-ref" 2>/dev/null; then
+    pass "validate_issue_ref invalid format"
+else
+    fail "validate_issue_ref invalid format" "exit non-zero" "exit 0"
+fi
+
+# Test: issue_ref_to_filename
+echo "--- Test: issue_ref_to_filename ---"
+result=$(issue_ref_to_filename "github.com/shoko/kugetsu#14")
+expected="github.com-shoko-kugetsu-14.json"
+if [ "$result" = "$expected" ]; then
+    pass "issue_ref_to_filename"
+else
+    fail "issue_ref_to_filename" "$expected" "$result"
+fi
+
+# Test: filename_to_issue_ref
+echo "--- Test: filename_to_issue_ref ---"
+result=$(filename_to_issue_ref "github.com-shoko-kugetsu-14.json")
+expected="github.com/shoko/kugetsu#14"
+if [ "$result" = "$expected" ]; then
+    pass "filename_to_issue_ref"
+else
+    fail "filename_to_issue_ref" "$expected" "$result"
+fi
+
+# Test: get_repo_url with org having hyphen
+echo "--- Test: get_repo_url with hyphenated org ---"
+result=$(get_repo_url "github.com/my-org/my-repo#1")
+expected="https://github.com/my-org/my-repo.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url with hyphenated org"
+else
+    fail "get_repo_url with hyphenated org" "$expected" "$result"
+fi
+
+# Test: get_repo_url with repo having dots
+echo "--- Test: get_repo_url with dotted repo ---"
+result=$(get_repo_url "github.com/shoko/kugetsu.utils#5")
+expected="https://github.com/shoko/kugetsu.utils.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url with dotted repo"
+else
+    fail "get_repo_url with dotted repo" "$expected" "$result"
+fi
+
+# Test: get_repo_url with underscore in username
+echo "--- Test: get_repo_url with underscore in user ---"
+result=$(get_repo_url "github.com/my_user/my_repo#10")
+expected="https://github.com/my_user/my_repo.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url with underscore in user"
+else
+    fail "get_repo_url with underscore in user" "$expected" "$result"
+fi
+
+# Test: get_repo_url with instance not in GIT_SERVERS (fallback)
+echo "--- Test: get_repo_url with unknown instance ---"
+result=$(get_repo_url "unknown.example.com/owner/repo#1")
+expected="https://unknown.example.com/owner/repo.git"
+if [ "$result" = "$expected" ]; then
+    pass "get_repo_url with unknown instance"
+else
+    fail "get_repo_url with unknown instance" "$expected" "$result"
+fi
+
+echo ""
+echo "=== Test Results ==="
+echo "Passed: $PASS"
+echo "Failed: $FAIL"
+
+if [ $FAIL -eq 0 ]; then
+    echo "All tests passed!"
+    exit 0
+else
+    echo "Some tests failed!"
+    exit 1
+fi